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SoftMouse
.NET
Workflows
and Frequently Asked Questions
Follow these common Workflows and FAQs to become an Expert in digital mouse colony management
Get Started
Get Started
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Getting Started
Import your Historical Colony Data
Free Data Importing Services
Premium Data Importing Service
Backfill your Historical Colony Data
Start from Scratch
Consult with a SoftMouse Representative
How to Format your FREE Data Import Sheet
Mice
Mice
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How To Create New Mice
How to Change the Default Wean, Mature, Tail Tag Ages
How to Deactivate a Mouse Record
Mark Pups As Ended
How to Delete a Mouse Record
Cages
Cages
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Creating Cages
Move Mice Into NEW Cages
Move Mice Into EXISTING Cages without Filter
Move Mice Into EXISTING Cages with Filter
How to End a Whole Cage
Add Location and Cage Capacities
Breeding Schemas
Breeding Schemas
View all topics
How To Create New Matings
Set Up a Harem in ONE Record
Set Up a Harem in TWO Records
Male Rotations...
Retire and Remate the Male
Add an Active Male Breeder to Multiple Matings
Set Up Weanlings in Matings
Track Plug Dates
How to Add a Mouse to a Mating Record
Set Up a Pending Mating
How to Retire a Breeder
How to Disband a Mating
How To End Old Breeders
Add a Pregnant Female
How to Add Pregnancy Date
Litters
Litters
View all topics
How To Create New Litters
Add a Litter to a deactivated Mating
Enter a Litter with Unknown Size
Add Pups to an Existing Litter
Foster A Litter
Edit the Parents of a Litter
Track Embryonic Litter
Move Mother and Pups to New Cage
Distinguish Between Alive and Ended Pups
Select the Mother of a Litter in a Harem Mating
How to Auto-Populate Generation to Litters
How to Delete a Litter
How to End a Litter
Tag and ID
Tag and ID
View all topics
Using Physical Tags
Add Ear Marks With Alt. ID
Physical Tag Automation
Searching for Multiple Tags and SIDs
How to Enable RapID Tag Functionality
How to Scan Mice with RapID Tags
Adding RapID to your Cage Cards
Genotype
Genotype
View all topics
Understanding Genotypes in SoftMouse
Ordering your Genes in the Genotype Display
Add Genotypes to Unweaned Pups
Find Mice to be Genotyped
Add Genotype to a Single Mouse
Add Genotypes to Multiple Mice
Edit Genotype of a Single Mouse
Edit Genotypes of Multiple Mice
Filtering By Genotype
SoftMouse.NET Integration with Transnetyx
Prepare your Transnetyx Account
Create a Transnetyx Order
Upload Genotype Results
Update a Transnetyx Order
Search for a Transnetyx Well Plate
Import Genotype Results
Link your Transnetyx Account to SoftMouse.NET
Acquire Your Transnetyx API Refresh Token
Turn off the Transnetyx API Integration
Manage User Access to the Transnetyx Account
Wean
Wean
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Tag, Genotype And Wean One Litter At A Time
Tag, Sex, and Genotype Multiple Litters At A Time
Wean Mice Before the Set Wean Date
Wean Litter and Exclude Unneeded Pups
Wean Multiple Litters at a Time
Get a List of Unweaned Pups
Mouselines - Strains
Mouselines - Strains
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How To Create New Mouselines
How To Edit Mouselines
How to Add Strains
How to change the Strain of Multiple Mice at a time
How to Transfer a Mouseline
Cage Cards
Cage Cards
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How to Customize Cage Cards
How to Print Multiple Cage Cards Per Sheet
How to Scan the QR Codes on Cage Cards
Where to Print Cage Cards
Configure Cage Cards From Chrome Browser
Configure Cage Cards From Firefox Browser
Configure Cage Cards From Safari Browser
Calendar and Events
Calendar and Events
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Set Email Reminders for Events
How to Create a Calendar Event
How to Add Records to an Existing Event
How to View All Records in an Event
Lineage and History
Lineage and History
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The Mouse Record
The Mating Record
The Litter Record
The Cage Record
Find All Pups From One Breeder
How to search for the Family Tree of a Mouse
Add Parents to Existing Mice
Projects and Experiments
Projects and Experiments
View all topics
Create an Experiment
Modify Mice in an Experiment
Find Mice in or not in an Experiment
Add a Mouse Back Into an Experiment
Delete Mice and Remove Mice Explained
Add Time Points at Random
Add Mice to an Existing Experiment
Protocols
Protocols
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Create a New Protocol
Automate Protocol Assignment
Manually Assign Protocols to Mice
Track No. of Animals Used
How Key Contacts Work
Print Protocol on the Cage Card
Search for Mice in a Specific Protocol
Archive and Restore a Protocol
Delete a Past Protocol
Attach a File to a Protocol
Add an Amendment
Allow other users to Set Protocol Permissions for the Group
Allow Users to Create Protocols
Allow Users to Edit or View Protocols
Allow Users to Assign Protocols to Mice or Cages
View a Protocol Without Edit Permission
Requests
Requests
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Create a Request with Colony Records
Create a Simple Request (no Colony Records)
Mark a Request as Done
Edit a Request
Who Can See Created Requests
How to View Completed Requests
How to see All Requests
Per Diems
Per Diems
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Set up Per Diem Rates
Assign a Per Diem to a Cage
Visualize Colony Costs
Export Colony Costs for Billing Purposes
Filter and Report
Filter and Report
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Quick Filter
How to View a List of all Your Mice
Find Total Mouse Count per Cage Type
Find Total Cage Count per Cage Type
Find Total Pup Count per Mouseline
Find Embryonic Litters
Sticky Filters
Viewing Total Colony Counts
Count of Mice Born or Weaned
Count of Ended Mice
Filter for Ended Mice
Filter for Weaned or Ended Litters
Filter for Inactive Cage Records
Filter for Archived Mouselines
Filter for Inactive Mating Pairs
How to Save Filters
Count of Mice Alive on a Given Day
Count of Active Cages a Given Day
Count of Active Matings on a Given Day
How to Export Your Data
Tips and Suggestions
Tips and Suggestions
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Upload Files to a Record
Mouse States Explained
Display Cage Tag in the Litter List
"No Change" in Drop Down Lists Explained
View Total Number of Records after Filtering
Archive Customizable Values
What Are SIDs
New Features Version 4 3 0
Account Customization
Account Customization
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Set General Preferences
Notification Lists
Color Coding Mouselines
Color Coding Mice
Customize Drop Down Lists
Customize Table Columns
Customize your Column Order
Mouseline - Default Genotype Associations
Mouseline - Strain Associations
Mouseline - Gene Associations
Gene - Allele Associations
Mouseline - Protocol Associations
Request - Subtype Associations
Owner - Billing Code Associations
How to Multi-Sort Columns
Undo and Fix Errors
Undo and Fix Errors
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Reactivate Ended Mice
Change a Mating's Set Up Date
Edit the Date Mated of Breeders
Switch Incorrect Breeders and Litter Parents
Enter Litter DOB Before Current Date
How to Reactivate a Disbanded Mating
Undo a Wean
How to Reassign a Litter to a New Mating
SoftMouse.NET Data Import Warning and Error Chart
Group Accounts
Group Accounts
View all topics
Create New Users in a Group
How to Deactivate a User
Strategies for Group Accounts
Set up a Decentralized Account (Lab Admin)
Set up a Centralized Account (Lab Admin)
Set Preference to View Centralized Colony Data
Associate an Existing Account to a New User
View Only Account Rights
How to Add an Admin
How to Change the Admin
Access Inactive User Data
How to Change Account Owner
How to Set Up an Access Only User
Sharing and Transfers
Sharing and Transfers
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Transfer Mice Between Owners
How to View Colony Data of Other Users
How to grant General Access
How to grant Overriding permissions in General Access
How to grant Edit or View only Access
How to grant Create and Transfer Access
How to grant Edit Access Permissions on specific fields
How to grant Access Permissions to your data
Account and Security Tips
Account and Security Tips
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Browser Compatibility
How to Clear Cache on Browsers
I Forgot My Password
How to Change your Password
What Does Inactive User Mean
Why Would A SoftMouse Account Access Be Deactivated
How to Reactivate My SoftMouse FREE Account Access
How Do I Know if My SoftMouse Account Access Has Been Deactivated
Do you keep a backup of our SoftMouse data
Recommended mobile devices for SoftMouse.NET
Security Hygiene Tips
Access Policy
How to Use the Activity History Log
Premium vs Forever FREE
Premium vs Forever FREE
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What is SoftMouse FREE
How to get SoftMouse FREE
How Long Can I Use SoftMouse FREE
Comparison Table Premium versus FREE
Features not available in SoftMouse FREE
Samples
Samples
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How to Add Samples to Protocols
How to Associate Sample Content
How to Configure Tube Labels
How to Create a Takedown Schema
How to Populate the Takedown Schema Template Library
How to Add or Edit Sequential ID
How to Enter a Takedown Request
How to Print Labels
How to Scan and Collect Samples
How to Create or Use an Emergency Kit
How to Find Animals Scheduled for Takedown
How to Find Samples Collected on a Specific Date
How to Find Samples Planned to be Collected on a Specific Date
How to Edit a Sample
How to Change the Study Group of an Animal
How to Mark an Accidentally Collected Sample as Archived
How to Mark an Accidentally Archived Sample as Collected
Orders
Orders
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How to Create a Regular (One-Time) Order
How to Create a Standing Order
Order States Explained
How to Confirm an Order
How to Pre-Receive an Order
How to Receive an Order
How to Create a Multi-Order
Studies
Studies
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How to Create a Task
How to Create a Workflow
How to Add a Schedule to a Study
How to Enter Study Data
How to View Tasks on the Calendar
How to Create a New Project
How to Assign Tasks to Users
How to Create a New Study and Study Groups
How to Create a Task with Thresholds
How to Add Time points to an existing Task
How to Add Animals to Study
How to Create a Task with Auto Calculated Value
How to Modify Time Points on an existing Task
How to Set Super Study Administrators